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Simplifying single cell analysis with feature-rich image processing

microMS is a GUI for performing automatic cell finding and point based registration from whole-slide images. The compiled executable will run directly on Windows operating systems. Python source code requires installation of dependent packages described below.

If you use microMS in a scientific publication, you are welcome to link to this site, but please include the following citation in your article:

Comi TJ; Neumann EK; Do TD; Sweedler JV. microMS: A Python Platform for Image-guided Mass Spectrometry Profiling, J. Amer. Soc. Mass Spectrom. 2017. DOI: 10.1007/s13361-017-1704-1

For complete details see the microMS User Guide.

Compiled Executable

A compiled Windows executable is provided that includes a Python interpreter and all dependencies. Extracted size is ~560 MB.

Download microMS.exe (ZIP folder).

To run, extract the zip folder and double click the contained "microMS.exe".

Python Source Code

microMS is a Python script written for Python 3 >= 3.5. After downloading all packages, no installation is required.

Download microMS (ZIP folder).

In addition to base components the following packages are required: