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Simplifying single cell analysis with feature-rich image processing

GUI for performing automatic cell finding and point based registration from whole-slide images.

Compiled Executable

A compiled Windows executable is provided which include a python interpreter and all dependencies. Extracted size is ~560 MB.

Download microMS exe (ZIP folder).


microMS is a Python script written for python 3 >= 3.5. After downloading all packages, no installation is required.

Download microMS (ZIP folder).

In addition to base components the following packages are required:

See microMS README file and User Guide (in ZIP file) for complete details.